Publications

Dr. Nikolic's Google Scholar here

2025

Kint S, Younes ST, Bao S, Long G, Wouters D, Stephenson E, Lou X,[...] Nikolic A., et al. Spatial epigenomic niches underlie glioblastoma cell state plasticity. bioRxiv. Preprint posted online May 9, 2025. doi:10.1101/2025.05.09.653178. [Download PDF]

Sinha S, Arora R, Kutluberk E, Verly M, Small C, Herik A, Burnett L, Cao L, [...] Nikolic A., et al. Spatial and single-cell transcriptomics reveal that oncofetal reprogramming of fibroblasts is associated with malignant degeneration of burn scar. J Invest Dermatol. 2025;145(2):444–451. doi:10.1016/j.jid.2024.07.022

2024

Johnston MJ, Lee JJY, Hu B, Nikolic A, Hasheminasabgorji E, Baguette A, et al. TULIPs decorate the three-dimensional genome of PFA ependymoma. Cell. 2024;187(18):4926–4945.e22. doi:10.1016/j.cell.2024.06.023

Mathur R, Wang Q, Schupp PG, Nikolic A, Hilz S, Hong C, Grishanina NR, et al. Glioblastoma evolution and heterogeneity from a 3D whole-tumor perspective. Cell. 2024;187(2):446–463.e16. doi:10.1016/j.cell.2023.12.013

2023

Nikolic A, Maule F, Bobyn A, Ellestad K, Paik S, Marhon SA, Mehdipour P, et al. macroH2A2 antagonizes epigenetic programs of stemness in glioblastoma. Nat Commun. 2023;14(1):3062. doi:10.1038/s41467-023-38919-2

Mirzaei R, D’Mello C, Liu M, Nikolic A, Kumar M, Visser F, Bose P, Gallo M, et al. Single-cell spatial analysis identifies regulators of brain tumor–initiating cells. Cancer Res. 2023;83(10):1725–1741. doi:10.1158/0008-5472.CAN-22-3004

2022

Chen HM, Nikolic A, Singhal D, Gallo M. Roles of chromatin remodelling and molecular heterogeneity in therapy resistance in glioblastoma. Cancers. 2022;14(19):4942. doi:10.3390/cancers14194942

2021

Nikolic A, Singhal D, Ellestad K, Johnston M, Shen Y, Gillmor A, et al. Copy-scAT: Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer. Sci Adv. 2021;7(42):eabg6045. doi:10.1126/sciadv.abg6045

Inoue Y, Nikolic A, Farnsworth D, Shi R, Johnson FD, Liu A, Ladanyi M, et al. Extracellular signal-regulated kinase mediates chromatin rewiring and lineage transformation in lung cancer. eLife. 2021;10:e66524. doi:10.7554/eLife.66524

Guilhamon P, Chesnelong C, Kushida MM, Nikolic A, Singhal D, et al. Single-cell chromatin accessibility profiling of glioblastoma identifies an invasive cancer stem cell population associated with lower survival. eLife. 2021;10:e64090. doi:10.7554/eLife.64090

2019

Johnston MJ, Nikolic A, Ninkovic N, Guilhamon P, Cavalli FMG, et al. High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma. Genome Res. 2019;29(8):1211–1222. doi:10.1101/gr.246520.118

Hoffman M, Gillmor AH, Kunz DJ, Johnston MJ, Nikolic A, Narta K, et al. Intratumoral genetic and functional heterogeneity in pediatric glioblastoma. Cancer Res. 2019;79(9):2111-2123. doi:10.1158/0008-5472.CAN-18-3441

2017

Meatherall BL, Brown K, Mohon AN, Doig CJ, Chen W, Gui X, Nikolic A, et al. Severe Plasmodium falciparum malaria in a traveller returning from Mozambique. Off J Assoc Med Microbiol Infect Dis. 2017.

Myers KA, Nikolic A, Romanchuk K, Weis E, Brundler MA, Lafay-Cousin L, et al. Optic neuropathy in the context of leukemia or lymphoma: Diagnostic approach to a neuro-oncologic emergency. Neuro-Oncol Pract. 2017;4(1):60-66. doi:10.1093/nop/npw006

2016

Thompson EM, Hielscher T, Bouffet E, Remke M, Luu B, Gururangan S, [...] Nikolic A et al. Prognostic value of medulloblastoma extent of resection after accounting for molecular subgroup. Lancet Oncol. 2016;17(4):484-495. doi:10.1016/S1470-2045(15)00581-1

Chiu MH, Meatherall B, Nikolic A, Cannon K, Fonseca K, Joseph JT, et al. Subacute sclerosing panencephalitis in pregnancy. Lancet Infect Dis. 2016;16(3):366-375. doi:10.1016/S1473-3099(15)00524-1

2011

Nikolic A, Baud S, Rauscher S, Pomès R. Molecular mechanism of β-sheet self-organization at water-hydrophobic interfaces. Proteins. 2011;79(1):1-22. doi:10.1002/prot.22854